Unravelling Colletotrichum species associated with Camellia: employing ApMat and GS loci to resolve species in the C. gloeosporioides complex
Identifieur interne : 000384 ( Main/Exploration ); précédent : 000383; suivant : 000385Unravelling Colletotrichum species associated with Camellia: employing ApMat and GS loci to resolve species in the C. gloeosporioides complex
Auteurs : F. Liu [République populaire de Chine, Pays-Bas] ; B. S. Weir [Nouvelle-Zélande] ; U. Damm [Nouvelle-Zélande] ; P. W. Crous [Pays-Bas, Afrique du Sud] ; Y. Wang [République populaire de Chine] ; B. Liu [République populaire de Chine] ; M. Wang [République populaire de Chine] ; M. Zhang [République populaire de Chine] ; L. Cai [République populaire de Chine]Source :
- Persoonia : Molecular Phylogeny and Evolution of Fungi [ 0031-5850 ] ; 2015.
Abstract
We investigated the phylogenetic diversity of 144
Url:
DOI: 10.3767/003158515X687597
PubMed: 26823629
PubMed Central: 4713112
Affiliations:
- Afrique du Sud, Nouvelle-Zélande, Pays-Bas, République populaire de Chine
- Utrecht (province)
- Utrecht
- Université d'Utrecht
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Liu</name><affiliation wicri:level="1"><nlm:aff id="A1"> State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea> State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101</wicri:regionArea><wicri:noRegion>100101</wicri:noRegion></affiliation><affiliation wicri:level="4"><nlm:aff id="A2"> Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Pays-Bas</country><wicri:regionArea> Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht</wicri:regionArea><orgName type="university">Université d'Utrecht</orgName><placeName><settlement type="city">Utrecht</settlement><region nuts="2">Utrecht (province)</region></placeName></affiliation></author><author><name sortKey="Weir, B S" sort="Weir, B S" uniqKey="Weir B" first="B. S." last="Weir">B. S. Weir</name><affiliation wicri:level="1"><nlm:aff id="A3"> Landcare Research, Private Bag 92170 Auckland, New Zealand.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Nouvelle-Zélande</country><wicri:regionArea> Landcare Research, Private Bag 92170 Auckland</wicri:regionArea><wicri:noRegion>Private Bag 92170 Auckland</wicri:noRegion></affiliation></author><author><name sortKey="Damm, U" sort="Damm, U" uniqKey="Damm U" first="U." last="Damm">U. Damm</name><affiliation wicri:level="1"><nlm:aff id="A3"> Landcare Research, Private Bag 92170 Auckland, New Zealand.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Nouvelle-Zélande</country><wicri:regionArea> Landcare Research, Private Bag 92170 Auckland</wicri:regionArea><wicri:noRegion>Private Bag 92170 Auckland</wicri:noRegion></affiliation></author><author><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name><affiliation wicri:level="4"><nlm:aff id="A2"> Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Pays-Bas</country><wicri:regionArea> Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht</wicri:regionArea><orgName type="university">Université d'Utrecht</orgName><placeName><settlement type="city">Utrecht</settlement><region nuts="2">Utrecht (province)</region></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="A5"> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea><wicri:noRegion>3584 CT Utrecht</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A6"> Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria, 0002, South Africa.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Afrique du Sud</country><wicri:regionArea> Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria, 0002</wicri:regionArea><wicri:noRegion>0002</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Y" sort="Wang, Y" uniqKey="Wang Y" first="Y." last="Wang">Y. Wang</name><affiliation wicri:level="1"><nlm:aff id="A7"> Department of Plant Pathology, Guizhou University, Guizhou, 550025, China.</nlm:aff><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea> Department of Plant Pathology, Guizhou University, Guizhou, 550025</wicri:regionArea><wicri:noRegion>550025</wicri:noRegion></affiliation></author><author><name sortKey="Liu, B" sort="Liu, B" uniqKey="Liu B" first="B." last="Liu">B. Liu</name><affiliation wicri:level="1"><nlm:aff id="A1"> State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea> State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101</wicri:regionArea><wicri:noRegion>100101</wicri:noRegion></affiliation></author><author><name sortKey="Wang, M" sort="Wang, M" uniqKey="Wang M" first="M." last="Wang">M. Wang</name><affiliation wicri:level="1"><nlm:aff id="A1"> State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea> State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101</wicri:regionArea><wicri:noRegion>100101</wicri:noRegion></affiliation></author><author><name sortKey="Zhang, M" sort="Zhang, M" uniqKey="Zhang M" first="M." last="Zhang">M. Zhang</name><affiliation wicri:level="1"><nlm:aff id="A8"> College of Plant Protection, Henan Agricultural University, Henan, 450002, China.</nlm:aff><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea> College of Plant Protection, Henan Agricultural University, Henan, 450002</wicri:regionArea><wicri:noRegion>450002</wicri:noRegion></affiliation></author><author><name sortKey="Cai, L" sort="Cai, L" uniqKey="Cai L" first="L." last="Cai">L. Cai</name><affiliation wicri:level="1"><nlm:aff id="A1"> State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea> State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101</wicri:regionArea><wicri:noRegion>100101</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26823629</idno><idno type="pmc">4713112</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4713112</idno><idno type="RBID">PMC:4713112</idno><idno type="doi">10.3767/003158515X687597</idno><date when="2015">2015</date><idno type="wicri:Area/Pmc/Corpus">000402</idno><idno type="wicri:Area/Pmc/Curation">000401</idno><idno type="wicri:Area/Pmc/Checkpoint">000300</idno><idno type="wicri:Area/Ncbi/Merge">001E87</idno><idno type="wicri:Area/Ncbi/Curation">001E87</idno><idno type="wicri:Area/Ncbi/Checkpoint">001E87</idno><idno type="wicri:Area/Main/Merge">000384</idno><idno type="wicri:Area/Main/Curation">000384</idno><idno type="wicri:Area/Main/Exploration">000384</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Unravelling <italic>Colletotrichum</italic> species associated with <italic>Camellia</italic>: employing ApMat and GS loci to resolve species in the <italic>C. gloeosporioides</italic> complex</title><author><name sortKey="Liu, F" sort="Liu, F" uniqKey="Liu F" first="F." last="Liu">F. Liu</name><affiliation wicri:level="1"><nlm:aff id="A1"> State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea> State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101</wicri:regionArea><wicri:noRegion>100101</wicri:noRegion></affiliation><affiliation wicri:level="4"><nlm:aff id="A2"> Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Pays-Bas</country><wicri:regionArea> Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht</wicri:regionArea><orgName type="university">Université d'Utrecht</orgName><placeName><settlement type="city">Utrecht</settlement><region nuts="2">Utrecht (province)</region></placeName></affiliation></author><author><name sortKey="Weir, B S" sort="Weir, B S" uniqKey="Weir B" first="B. S." last="Weir">B. S. Weir</name><affiliation wicri:level="1"><nlm:aff id="A3"> Landcare Research, Private Bag 92170 Auckland, New Zealand.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Nouvelle-Zélande</country><wicri:regionArea> Landcare Research, Private Bag 92170 Auckland</wicri:regionArea><wicri:noRegion>Private Bag 92170 Auckland</wicri:noRegion></affiliation></author><author><name sortKey="Damm, U" sort="Damm, U" uniqKey="Damm U" first="U." last="Damm">U. Damm</name><affiliation wicri:level="1"><nlm:aff id="A3"> Landcare Research, Private Bag 92170 Auckland, New Zealand.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Nouvelle-Zélande</country><wicri:regionArea> Landcare Research, Private Bag 92170 Auckland</wicri:regionArea><wicri:noRegion>Private Bag 92170 Auckland</wicri:noRegion></affiliation></author><author><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name><affiliation wicri:level="4"><nlm:aff id="A2"> Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Pays-Bas</country><wicri:regionArea> Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht</wicri:regionArea><orgName type="university">Université d'Utrecht</orgName><placeName><settlement type="city">Utrecht</settlement><region nuts="2">Utrecht (province)</region></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="A5"> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea><wicri:noRegion>3584 CT Utrecht</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A6"> Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria, 0002, South Africa.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Afrique du Sud</country><wicri:regionArea> Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria, 0002</wicri:regionArea><wicri:noRegion>0002</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Y" sort="Wang, Y" uniqKey="Wang Y" first="Y." last="Wang">Y. Wang</name><affiliation wicri:level="1"><nlm:aff id="A7"> Department of Plant Pathology, Guizhou University, Guizhou, 550025, China.</nlm:aff><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea> Department of Plant Pathology, Guizhou University, Guizhou, 550025</wicri:regionArea><wicri:noRegion>550025</wicri:noRegion></affiliation></author><author><name sortKey="Liu, B" sort="Liu, B" uniqKey="Liu B" first="B." last="Liu">B. Liu</name><affiliation wicri:level="1"><nlm:aff id="A1"> State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea> State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101</wicri:regionArea><wicri:noRegion>100101</wicri:noRegion></affiliation></author><author><name sortKey="Wang, M" sort="Wang, M" uniqKey="Wang M" first="M." last="Wang">M. Wang</name><affiliation wicri:level="1"><nlm:aff id="A1"> State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea> State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101</wicri:regionArea><wicri:noRegion>100101</wicri:noRegion></affiliation></author><author><name sortKey="Zhang, M" sort="Zhang, M" uniqKey="Zhang M" first="M." last="Zhang">M. Zhang</name><affiliation wicri:level="1"><nlm:aff id="A8"> College of Plant Protection, Henan Agricultural University, Henan, 450002, China.</nlm:aff><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea> College of Plant Protection, Henan Agricultural University, Henan, 450002</wicri:regionArea><wicri:noRegion>450002</wicri:noRegion></affiliation></author><author><name sortKey="Cai, L" sort="Cai, L" uniqKey="Cai L" first="L." last="Cai">L. Cai</name><affiliation wicri:level="1"><nlm:aff id="A1"> State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea> State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101</wicri:regionArea><wicri:noRegion>100101</wicri:noRegion></affiliation></author></analytic><series><title level="j">Persoonia : Molecular Phylogeny and Evolution of Fungi</title><idno type="ISSN">0031-5850</idno><idno type="eISSN">1878-9080</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>We investigated the phylogenetic diversity of 144 <italic>Colletotrichum</italic> isolates associated with symptomatic and asymptomatic tissues of <italic>Camellia sinensis</italic> and other <italic>Camellia</italic> spp. from seven provinces in China (Fujian, Guizhou, Henan, Jiangxi, Sichuan, Yunnan, Zhejiang), and seven isolates obtained from other countries, including Indonesia, UK, and the USA. Based on multi-locus (ACT, ApMat, CAL, GAPDH, GS, ITS, TUB2) phylogenetic analyses and phenotypic characters, 11 species were distinguished, including nine well-characterised species (<italic>C. alienum</italic>, <italic>C. boninense</italic>, <italic>C. camelliae</italic>, <italic>C. cliviae</italic>, <italic>C. fioriniae</italic>, <italic>C. fructicola</italic>, <italic>C. gloeosporioides</italic>, <italic>C. karstii</italic>, <italic>C. sia-mense</italic>), and two novel species (<italic>C. henanense</italic> and <italic>C. jiangxiense</italic>). Of these, <italic>C. camelliae</italic> proved to be the most dominant and probably host specific taxon occurring on <italic>Camellia</italic>. An epitype is also designated for the latter species in this study. <italic>Colletotrichum jiangxiense</italic> is shown to be phylogenetically closely related to the coffee berry pathogen <italic>C. kahawae</italic> subsp. <italic>kahawae</italic>. Pathogenicity tests and the pairwise homoplasy index test suggest that <italic>C. jiangxiense</italic> and <italic>C. kahawae</italic> subsp. <italic>kahawae</italic> are two independent species. This study represents the first report of <italic>C. alienum</italic> and <italic>C. cliviae</italic> occurring on <italic>Camellia sinensis</italic>. In addition, our study demonstrated that the combined use of the loci ApMat and GS in a phylogenetic analysis is able to resolve all currently accepted species in the <italic>C. gloeosporioides</italic> species complex.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Alfieri, Sa" uniqKey="Alfieri S">SA Alfieri</name></author><author><name sortKey="Langdon, Kr" uniqKey="Langdon K">KR Langdon</name></author><author><name sortKey="Wehlburg, C" uniqKey="Wehlburg C">C Wehlburg</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Arx, Ja Von" uniqKey="Arx J">JA von Arx</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cai, L" uniqKey="Cai L">L Cai</name></author><author><name sortKey="Hyde, Kd" uniqKey="Hyde K">KD Hyde</name></author><author><name sortKey="Taylor, Pwj" uniqKey="Taylor P">PWJ Taylor</name></author></analytic></biblStruct><biblStruct><analytic><author><name 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Liu</name></noRegion><name sortKey="Cai, L" sort="Cai, L" uniqKey="Cai L" first="L." last="Cai">L. Cai</name><name sortKey="Liu, B" sort="Liu, B" uniqKey="Liu B" first="B." last="Liu">B. Liu</name><name sortKey="Wang, M" sort="Wang, M" uniqKey="Wang M" first="M." last="Wang">M. Wang</name><name sortKey="Wang, Y" sort="Wang, Y" uniqKey="Wang Y" first="Y." last="Wang">Y. Wang</name><name sortKey="Zhang, M" sort="Zhang, M" uniqKey="Zhang M" first="M." last="Zhang">M. Zhang</name></country><country name="Pays-Bas"><region name="Utrecht (province)"><name sortKey="Liu, F" sort="Liu, F" uniqKey="Liu F" first="F." last="Liu">F. Liu</name></region><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name></country><country name="Nouvelle-Zélande"><noRegion><name sortKey="Weir, B S" sort="Weir, B S" uniqKey="Weir B" first="B. S." last="Weir">B. S. Weir</name></noRegion><name sortKey="Damm, U" sort="Damm, U" uniqKey="Damm U" first="U." last="Damm">U. Damm</name></country><country name="Afrique du Sud"><noRegion><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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